Package 'sdcHierarchies'

Add nodes to an existing hierarchy

Description

This function allows to add nodes (levels) to an existing nested hierarchy.

Usage

hier_add(tree, root, nodes)

Arguments

tree	a (nested) hierarchy created using hier_create() or modified using hier_add(), hier_delete() or hier_rename().
root	(character) a name of an existing node in the hierarchy
nodes	(character) names of new nodes that should be added below "root"

Examples

h <- hier_create(root = "Total",  nodes = LETTERS[1:3])
h <- hier_add(h, root = "A", nodes = c("a1", "a5"))
hier_display(h)

---

Create/Modify hierarchies interactively

Description

This function starts the interactive shiny-app to (optionally) create and/or modify a nested hierarchy. It is possible to supply a character vector from which the hierarchy can be interactively built. Once this has been done, it is possible to modify and export the resulting hierarchy.

Usage

hier_app(x = hier_create(), ...)

Arguments

x	a character vector containing nested levels or an object generated with hier_create()
...	arguments (e.g host) that are passed through shiny::runApp() when starting the shiny application

Details

Another option is to supply an already existing hierarchy object. In this case, it is possible to modify the existing object in the app.

Value

The app can return a hierarchy object (either a data.frame or a tree-based object)

Examples

## Not run: 
# start with an empty hierarchy
res <- hier_app()

# start with a character vector that is used to
build the hierarchy
codes <- c("11", "12", "21", "22", "23", "31", "32")
res <- hier_app(codes); print(res)

## End(Not run)

---

Default-Codes

Description

hier_codes() returns the standardized codes for the nodes of a tree.

Usage

hier_codes(tree)

Arguments

tree	a (nested) hierarchy created using hier_create() or modified using hier_add(), hier_delete() or hier_rename().

Value

a named character vector with names being the node-names and the values the standardized codes

Examples

h <- hier_create(root = "Total",  nodes = LETTERS[1:3])
h <- hier_add(h, root = "A", nodes = c("a1", "a5"))
hier_codes(h)

---

Compute a nested hierarchy

Description

This function allows to compute a nested hierarchy from an character vector or a (named) list.

Usage

hier_compute(inp, dim_spec = NULL, root = NULL, method = "len", as = "network")

Arguments

inp	a character vector (for methods "len" and "endpos" containing codes of a hierarchical variables or a list for method list. In the latter case, the input is expected to be a named list where each list-element contains the codes belonging to the node that has the name of this specific list element. In the examples below, the required input formats are further explained.
dim_spec	an (integerish) vector containing either the length (in terms of characters) for each level or the end-positions of these levels. In the latter-case, one needs to set argument method to "endpos". This argument is ignored in case the hierarchy should be created from a named list.
root	NULL or a scalar characer specifying the name of the overall total in case it is not encoded at the first positions of dim.
method	either "len" (the default) or "endpos" "len": the number of characters for each of the levels needs to be specified "endpos": the end-positions for each levels need to be fixed "list": the end-positions for each levels need to be fixed
as	(character) specifies the type of the return object. Possible choices are: "network": the default; a data.table as network. The table consists of two columns where the "root" column defines the name of parent node to the label in the "leaf" column. "df": a data.frame in "@; label"-format. "dt": a data.table in "@; label"-format. "code": returns the R-code that is required to build the tree "sdc": the tree is structured as a list "argus": suitable input for hier_export() to write "hrc"-files for tau argus. "json": a character-vector encoded as json-string.

Value

a hierarchical data structure depending on choice of argument as

Examples

## Example Regional Codes (NUTS)
# digits 1-2 (len=2, endpos=2) --> level 1
# digit 3 (len=1, endpos=3) --> level 2
# digits 4-5 (len=2, endpos=5) -> level 3

# all strings have equal length but total is not encoded in these values
geo_m <- c(
  "01051", "01053", "01054", "01055",
  "01056", "01057", "01058", "01059", "01060",
  "01061", "01062",
  "02000",
  "03151", "03152", "03153", "03154", "03155", "03156", "03157", "03158",
  "03251", "03252", "03254", "03255", "03256", "03257",
  "03351", "03352", "03353", "03354", "03355",
  "03356", "03357", "03358", "03359",
  "03360", "03361",
  "03451", "03452", "03453", "03454", "03455", "03456",
  "10155")

a <- hier_compute(
  inp = geo_m,
  dim_spec = c(2, 3, 5),
  root = "Tot",
  method = "endpos"
)
b <- hier_compute(
  inp = geo_m,
  dim_spec = c(2, 1, 2),
  root = "Tot",
  method = "len"
)
identical(
  hier_convert(a, as = "df"),
  hier_convert(b, as = "df")
)

# total is contained in the first 3 positions of the input values
# --> we need to set name of the overall total (argument "root")
# to NULL (the default)
geo_m_with_tot <- paste0("Tot", geo_m)
a <- hier_compute(
  inp = geo_m_with_tot,
  dim_spec = c(3, 2, 1, 2),
  method = "len"
)
b <- hier_compute(
  inp = geo_m_with_tot,
  dim_spec = c(3, 5, 6, 8),
  method = "endpos"
)
identical(a, b)

# example where inputs have unequal length
# the overall total is not included in input vector
yae_h <- c(
  "1.1.1.", "1.1.2.",
  "1.2.1.", "1.2.2.", "1.2.3.", "1.2.4.", "1.2.5.", "1.3.1.",
  "1.3.2.", "1.3.3.", "1.3.4.", "1.3.5.",
  "1.4.1.", "1.4.2.", "1.4.3.", "1.4.4.", "1.4.5.",
  "1.5.", "1.6.", "1.7.", "1.8.", "1.9.", "2.", "3.")

a <- hier_compute(
  inp = yae_h,
  dim_spec = c(2, 4, 6),
  root = "Tot",
  method = "endpos"
)
b <- hier_compute(
  inp = yae_h,
  dim_spec = c(2, 2, 2),
  root = "Tot",
  method = "len"
)
identical(
  hier_convert(a, as = "df"),
  hier_convert(b, as = "df")
)

# Same example, but overall total is contained in the first 3 positions
# of the input values --> argument "root" needs to be
# set to NULL (the default)
yae_h_with_tot <- paste0("Tot", yae_h)
a <- hier_compute(
  inp = yae_h_with_tot,
  dim_spec = c(3, 2, 2, 2),
  method = "len",
)
b <- hier_compute(
  inp = yae_h_with_tot,
  dim_spec = c(3, 5, 7, 9),
  method = "endpos"
)
identical(a, b)

# An example using a list as input (same as above)
# Hierarchy: digits 1-2 (nuts1), digit 3 (nut2), digits 4-5 (nuts3)
# The order of the list-elements is not important but the
# names of input-list correspond to (subtotal/level) names
geo_ll <- list()
geo_ll[["Total"]] <- c("01", "02", "03", "10")
geo_ll[["010"]]   <- c(
  "01051", "01053", "01054", "01055",
  "01056", "01057", "01058", "01059",
  "01060", "01061", "01062"
)
geo_ll[["031"]]   <- c(
  "03151", "03152", "03153", "03154",
  "03155", "03156", "03157", "03158"
)
geo_ll[["032"]]   <- c(
  "03251", "03252", "03254",
  "03255", "03256", "03257"
)
geo_ll[["033"]]   <- c(
  "03351", "03352", "03353", "03354", "03355",
  "03356", "03357", "03358", "03359",
  "03360", "03361"
)
geo_ll[["034"]]   <- c(
  "03451", "03452", "03453",
  "03454", "03455","03456"
)
geo_ll[["01"]]    <- "010"
geo_ll[["02"]]    <- "020"
geo_ll[["020"]]   <- "02000"
geo_ll[["03"]]    <- c("031", "032", "033", "034")
geo_ll[["10"]]    <- "101"
geo_ll[["101"]]   <- "10155"

d <- hier_compute(
  inp = geo_ll,
  root = "Total",
  method = "list"
); d

## Reproduce example from above with input defined as named list
yae_ll <- list()
yae_ll[["Total"]] <- c("1.", "2.", "3.")
yae_ll[["1."]] <- paste0("1.", 1:9, ".")
yae_ll[["1.1."]] <- paste0("1.1.", 1:2, ".")
yae_ll[["1.2."]] <- paste0("1.2.", 1:5, ".")
yae_ll[["1.3."]] <- paste0("1.3.", 1:5, ".")
yae_ll[["1.4."]] <- paste0("1.4.", 1:6, ".")

# return result as data.frame
d <- hier_compute(
  inp = yae_ll,
  root = "Total",
  method = "list",
  as = "df"
); d

---

Converts hierarchies into different formats

Description

This functions allows to convert nested hierarchies into other data structures.

Usage

hier_convert(tree, as = "df")

Arguments

tree

a (nested) hierarchy created using hier_create() or modified using hier_add(), hier_delete() or hier_rename().

as

(character) specifying the export format. Possible choices are: "df": a data.frame with two columns. The first columns contains a string containing as many @ as the level of the node in the string (e.g @ corresponds to the overall total while @ would be all codes contributing to the total. The second column contains the names of the levels. "dt": like the df-version but this result is converted to a data.table "argus": used to create hrc-files suitable for tau-argus "json": json format suitable e.g. as input for the shinyTree package. "code": code required to generate the hierarchy "sdc": a list which is a suitable input for sdcTable

Examples

h <- hier_create(root = "Total", nodes = LETTERS[1:2])
h <- hier_add(h, root = "A", nodes = c("a1", "a2"))
h <- hier_add(h, root = "B", nodes = c("b1", "b2"))
h <- hier_add(h, root = "b1", nodes = "b1a")
hier_display(h)

# required code to build the hierarchy
hier_convert(h, as = "code")

# data.frame
hier_convert(h, as = "df")

---

Create a hierarchy

Description

This functions allows to generate a hierarchical data structure that can be used in other packages such as cellKey or sdcTable.

Usage

hier_create(root = "Total", nodes = NULL)

Arguments

root	(character) name of the overall total
nodes	(character) name of leaves (nodes) in the hierarchy

Value

a (nested) sdc hierarchy tree

See Also

hier_add hier_delete hier_rename hier_export hier_convert hier_app hier_info

Examples

# without nodes
h <- hier_create(root = "tot")
hier_display(h)

# with nodes
h <- hier_create(root = "tot", nodes = LETTERS[1:5])
hier_display(h)

---

Delete nodes from an existing hierarchy

Description

This function allows to delete nodes (levels) from an existing nested hierarchy.

Usage

hier_delete(tree, nodes)

Arguments

tree	a (nested) hierarchy created using hier_create() or modified using hier_add(), hier_delete() or hier_rename().
nodes	character vector of nodes that should be deleted

Examples

h <- hier_create(root = "Total", nodes = LETTERS[1:2])
h <- hier_add(h, root = "A", nodes = c("a1", "a2"))
h <- hier_add(h, root = "B", nodes = c("b1", "b2"))
h <- hier_add(h, root = "b1", nodes = "b1a")
hier_display(h)

h <- hier_delete(h, nodes = c("a1", "b1a"))
hier_display(h)

---

Displays the hierarchy

Description

This function shows the entire hierarchy in a nice way.

Usage

hier_display(x, root = NULL)

Arguments

x	a hierarchy object, either directly generated and modified using hier_create(), hier_add(), hier_delete() and/or hier_rename() or objects converted using hier_convert()
root	NULL if the entire tree should be printed or a name of a node which is used as temporary root-node for printing

Value

NULL; the tree is printed to the prompt

Examples

h <- hier_create(root = "Total", nodes = LETTERS[1:2])
h <- hier_add(h, root = "A", nodes = c("a1", "a2"))

# display the entire tree
hier_display(h)

# display only a subtree
hier_display(h, root = "A")

---

Export a hierarchy into a file

Description

This function allows to write nested hierarchies into files on your disk.

Usage

hier_export(tree, as = "df", path, verbose = FALSE)

Arguments

tree	a (nested) hierarchy created using hier_create() or modified using hier_add(), hier_delete() or hier_rename().
as	(character) specifying the export format. Possible choices are: "df": a data.frame with two columns. The first columns contains a string containing as many @ as the level of the node in the string (e.g @ corresponds to the overall total while @ would be all codes contributing to the total. The second column contains the names of the levels. "dt": like the df-version but this result is converted to a data.table "argus": used to create hrc-files suitable for tau-argus "json": json format suitable e.g. as input for the shinyTree package. "code": code required to generate the hierarchy "sdc": a list which is a suitable input for sdcTable
path	(character) relative or absolute path where results should be written to
verbose	(logical) additional results

Examples

h <- hier_create(root = "Total", nodes = LETTERS[1:2])
h <- hier_add(h, root = "A", nodes = c("a1", "a2"))
h <- hier_add(h, root = "B", nodes = c("b1", "b2"))
h <- hier_add(h, root = "b1", nodes = "b1a")
hier_display(h)

# export as input for tauArgus
hier_export(h, as = "argus", path = file.path(tempdir(), "h.hrc"))

---

Compute a grid given different hierarchies

Description

This function returns a data.table containing all possible combinations of codes from at least one hierarchy object. This is useful to compute a "complete" table from several hierarchies.

Usage

hier_grid(..., add_dups = TRUE, add_levs = FALSE, add_default_codes = FALSE)

Arguments

...	one or more hierarchy objects created with hier_create() or hier_compute()
add_dups	scalar logical defining if bogus codes (codes that are the only leaf contributing to a parent that also has no siblings) should be included.
add_levs	scalar logical defining if numerical levels for each codes should be appended to the output data.table.
add_default_codes	scalar logical definining if standardized level codes should be additionally returned

Value

a data.table featuring a column for each hierarchy object specified in argument .... These columns are labeled ⁠v{n}⁠. If add_levs is TRUE, for each hierarchy provided, an additional column labeled ⁠levs_v{n}⁠ is appended to the output. Its values define the hierarchy level of the corresponding code given in ⁠v{n}⁠ in the same row. If add_default_codes is TRUE, for each hierarchy provided an additional column ⁠default_v{n}⁠ is provided

Examples

# define some hierarchies with some "duplicates" or "bogus" codes
h1 <- hier_create("Total", nodes = LETTERS[1:3])
h1 <- hier_add(h1, root = "A", node = "a1")
h1 <- hier_add(h1, root = "a1", node = "aa1")

h2 <- hier_create("Total", letters[1:5])
h2 <- hier_add(h2, root = "b", node = "b1")
h2 <- hier_add(h2, root = "d", node = "d1")

# with all codes, also "bogus" codes
hier_grid(h1, h2)

# only the required codes to build the complete hierarchy (no bogus codes)
hier_grid(h1, h2, add_dups = FALSE)

# also contain columns specifying the hierarchy level
hier_grid(h1, h2, add_dups = FALSE, add_levs = TRUE)

---

Imports a nested data structure

Description

This function creates a nested sdc hierarchy from various input structures.

Usage

hier_import(inp, from = "json", root = NULL, keep_order = FALSE)

Arguments

inp	an object that should be imported. Argument from specifies the input format.
from	(character) from which format should be imported. Possible choices are: "json": a json-encoded string as created using hier_convert() with argument ⁠as = "json")⁠ "df": a data.frame in ⁠@;level⁠-format or an input created with hier_convert() with argument ⁠as = "df")⁠ "dt": a data.frame in ⁠@;level⁠-format or an input created with hier_convert() with argument ⁠as = "dt")⁠ "argus": a json-encoded string as created using hier_convert() with argument ⁠as = "argus")⁠ "code": a json-encoded string as created using hier_convert() with argument ⁠as = "code")⁠ "hrc": text-files in tau-argus hrc-format "sdc": a json-encoded string as created using hier_convert() with argument ⁠as = "sdc")⁠
root	optional name of overall total
keep_order	if TRUE, the original order of nodes is kept from the input object; if FALSE, the nodes are sorted lexicographically within each leaf.

Value

a (nested) hierarchy

See Also

hier_to_tree()

Examples

h <- hier_create(root = "Total", nodes = LETTERS[1:2])
h <- hier_add(h, root = "A", nodes = c("a1", "a2"))
h <- hier_add(h, root = "B", nodes = c("b1", "b2"))
h <- hier_add(h, root = "b1", nodes = "b1a")
hier_display(h)

df <- hier_convert(h, as = "df")
hier_display(df)

h2 <- hier_import(df, from = "df")
hier_display(h2)

# check order
df <- data.frame(
  level = c("@", "@@", "@@"),
  name = c("T", "m", "f")
)
hier_display(hier_import(df, from = "df")) # automatically sorted (T, f, m)
hier_display(hier_import(df, from = "df", keep_order = TRUE)) # original order (T, m, f)

---

Information about hierarchy-codes

Description

hier_info() computes various information about hierarchy codes or the (nested) hierarchy.

Usage

hier_info(tree, nodes = NULL)

Arguments

tree	a (nested) hierarchy created using hier_create() or modified using hier_add(), hier_delete() or hier_rename().
nodes	(character) names of new nodes that should be added below "root"

Value

a list with information about the required nodes. If nodes is NULL (the default), the information is computed for all available nodes of the hierarchy. The following properties are computed:

• exists: (logical) does the node exist

• name: (character) node name

• is_rootnode: (logical) is the node the overall root of the tree?

• level: (numeric) what is the level of the node

• is_leaf: (logical) is the node a leaf?

• siblings: (character) what are siblings of this node?

• contributing_codes: (character) which codes are contributing to this node? If none (it is a leaf), NA is returned

• children: (character) the names of the children of the node. If it has none (it is a leaf), NA is returned

• is_bogus: (logical) is it a bogus code (i. e the only children of a leaf?)

Examples

h <- hier_create(root = "Total",  nodes = LETTERS[1:3])
h <- hier_add(h, root = "A", nodes = c("a1", "a5"))
hier_display(h)

# about a specific node
hier_info(h, nodes = "a1")

# about all nodes
hier_info(h)

---

Match default and original node labels

Description

This function returns a data.table that maps original and default codes.

Usage

hier_match(tree, nodes = NULL, inputs = "orig")

Arguments

tree	an input derived from hier_create() or hier_convert()
nodes	NULL or a character vector specifying either original node names or standardized default codes. If NULL, the information is returned for all nodes.
inputs	(character) specifies what kind of node names are provided in argument nodes. Allowed choices are: "orig": argument nodes refers to original node names "default": argument nodes refers to standardized default codes

Value

a data.table with the following columns:

• "orig": the original node names

• '"default": the standardized names

• "is_bogus": TRUE if the code is a "bogus" (duplicated) node.

Examples

h <- hier_create(root = "Tot", nodes = letters[1:5])
h <- hier_add(h, root = "a", nodes = "a0")
h2 <- hier_convert(tree = h, as = "dt")
hier_match(tree = h, nodes = c("a", "b"), inputs = "orig")
hier_match(tree = h2, nodes = c("01", "02"), inputs = "default")

---

Extract name of nodes (levels)

Description

This function allows to extract the all the names of the nodes including all (sub)-nodes and leaves in the given hierarchy.

Usage

hier_nodenames(tree, root = NULL)

Arguments

tree	a (nested) hierarchy created using hier_create() or modified using hier_add(), hier_delete() or hier_rename().
root	(character) name of start node from which all lower level-names should be returned

Examples

h <- hier_create(root = "Total",  nodes = LETTERS[1:3])
h <- hier_add(h, root = "A", nodes = c("a1", "a5"))
hier_nodenames(h)

---

Rename nodes in an existing hierarchy

Description

This function allows to rename one or more node(s) (levels) in an existing nested hierarchy.

Usage

hier_rename(tree, nodes)

Arguments

tree	a (nested) hierarchy created using hier_create() or modified using hier_add(), hier_delete() or hier_rename().
nodes	(character) new names of nodes/levels that should be changed as a named vector: names refer to old, existing names, the values to the new labels

Examples

h <- hier_create(root = "Total",  nodes = LETTERS[1:3])
h <- hier_add(h, root = "A", nodes = c("a1", "a5"))
hier_display(h)

h <- hier_rename(h, nodes = c("a1" = "x1", "A" = "X"))
hier_display(h)

---

Convert a nested hierarchy into the default format

Description

This function returns a tree in default format (as for example created using hier_create()) for objects created using hier_convert().

Usage

hier_to_tree(inp)

Arguments

inp	a nested tree object created using hier_create() or an object converted with hier_convert()

Value

a nested hierarchy with default format

Examples

h <- hier_create(root = "Total",  nodes = LETTERS[1:3])
h <- hier_add(h, root = "A", nodes = c("a1", "a5"))
sdc <- hier_convert(h, as = "sdc")
hier_display(h)
hier_display(hier_to_tree(h))
hier_display(hier_to_tree(sdc))

---

Show the package vignette

Description

This function opens the introductionary package vignette and opens it in a new browser tab/window.

Usage

hier_vignette()

Value

a browser windows/tab with showing the vignette

Examples

## Not run: 
hier_vignette()

## End(Not run)

---